rs27351801 SNP Detail

Summary

• ID
  rs27351801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160064908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGTCAG ACAAGAAGCA ATTACATGCC CTTGTATCTT
  GAGGCCAGCG TGGAAGCTGT GTTTGGGGAA TTGCTGTTGA GCCCTGGCTT TGGGGCTCGG
  K
  CTCGCAAAAT CTGAACAGCA GGATAGCCAA GACTCTAGGT ATGAAGTCTC GGAGTTGGAG
  GCCACTCCAG GTCACATGTA GAATGACCTG GTGATTCAGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37534327	NES08893208	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27351801					SNP	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37534327	NES08893208	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160064908 () rs orientation: forward

Symbol	Name	Function Class
Gm34805	predicted gene, 34805	1034 bp downstream
Rr568957	regulatory region 568957	1978 bp distal
Rr568958	regulatory region 568958	917 bp distal
Rr568959	regulatory region 568959	258 bp proximal