rs27351799 SNP Detail

Summary

• ID
  rs27351799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160065135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACTCT AGGTATGAAG
  TCTCGGAGTT GGAGGCCACT CCAGGTCACA TGTAGAATGA CCTGGTGATT CAGCCCAAAT
  AGCATCATAA GCAACCCAAC AGTGCCCACC TCCTACAACT GACCCTTCTG CTTTGCCTTT
  GAACTTCTAT GTTTCTATTC ACATAAATTT GACATTCTTG CACCCATAAA GTAAACTCCA
  R
  TTCTTAGTCT GTTTCCAAGG TAACCTATAA AAACAGACAC CACTCATGAT GACACTGCGG
  TTTGATTTGC CATGCCCCTG TAAACGGTTC TCCCAAGGAC TATCCAGGTT CTTGTCACTC
  TGGGGACTGA TGTGGCTAAC TCCTGTCTGT TCTGCTTTCA GCGGCTCCCC TCTTCAAGAT
  TACTTCCCCA GCATTTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37534325	NES08893210	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27351799					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37534325	NES08893210	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160065135 () rs orientation: forward

Symbol	Name	Function Class
Gm34805	predicted gene, 34805	807 bp downstream
Rr568958	regulatory region 568958	1144 bp distal
Rr568959	regulatory region 568959	31 bp proximal