rs27345819 SNP Detail

Summary

• ID
  rs27345819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165588187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCCAG AGAGGCCCAT
  TGGACGGACA GTCTAACCAA TCCCGAAAGC GGAGGCTTTC CCTGTGGCCA GGCTATCCCT
  GTTGACCCAT CTCTCAGAAG TGGATACTGT GGCTCTTCAG GTCAGGATGG GGGGCATGAC
  GTTAAGTGAG CCACCCCCAA GTCACCTTCA GAAAATACAG GCAGAGTCCC AGTATGTACC
  M
  AGGTCCTCCG TGTGGGTGCT TCAAACTACT GGGTCTCACT TCCTCCCTAC GGCACAAAAG
  AGGCACCTCC TGCCCTTATG GTTGGGAGAT TTTTAATTAG AGGTAGGGGC AGGGTCTCAT
  GTAGCCCAGG CTGGCTTAGA ACTCACTAGA CAGTCAAAGA TGACCTTGAA CTTCCGAATC
  CCCACCTCTG TGCTGAGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513364	NES08878470	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27345819					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513364	NES08878470	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165588187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569993	regulatory region 569993			within coordinates
Rr569994	regulatory region 569994			1808 bp proximal