rs27342853 SNP Detail

Summary

• ID
  rs27342853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATCAAA TGATTCTGCC
  TGGTGAAAGA TGCCTTGGCT GCAGCTTAGC TGGGCTGAGC AGCCCCCTGG TTTCTTATCC
  TCTTGGGCCT TTCCAGAAGT ATGTGGAGGT CCCTGTGACC ATCAGTCTAT TGGTGCATGA
  ACATATATGG TTTGCATATA CCCAGAGAAG TCCAGAAGCC CTAGAAAAGC CAGAGTACCA
  R
  CTAGTTCCTG AGCACCCCAG GCCTGGCTTC AGCATGGGGC ACCCAACCAG AGCCTAGCTG
  TCATTTCAGA TAGAGTGAGC ACCAGGGTCC CAAACCAAAC GGTGGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTAGGGAGGG AGGGAGGGAG AGAGGGAGGG AGGGAGGGAG GGAGGGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37497374	NES08937733	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27342853					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37497374	NES08937733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12376	CpG island 12376			1900 bp distal
Cpgi12377	CpG island 12377			1305 bp distal
Cpgi12378	CpG island 12378			418 bp proximal
Nkx2-2	NK2 homeobox 2			Intron
				Noncoding-Transcript-Variant
Rr406682	regulatory region 406682			within coordinates
Rr566759	regulatory region 566759			816 bp distal
Rr566762	regulatory region 566762			1422 bp distal
Rr566763	regulatory region 566763			294 bp proximal