rs27339710 SNP Detail

Summary

• ID
  rs27339710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157680607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGCTGA AAAATGTGCC
  CGGTGGCATG CTGGTGACAG AACATTGCCT TTAGAGTGCC CACATTAGGA ATCTGATAAC
  ATTATATTAG TGGGGGCAAT GGCTTGGGAA GACAGCTCCT AGAAGGCTAG CGAGGATAAG
  CCGTGCATCC TGCACACAGC AGCACCCAGA AGTAGAAGGA AGGCCCAAGG ACAAAGCACC
  R
  CCCTGCCTTC TGCCACCCTC CAGCTGCGCA TCCTGGCAAA CTCCCATAAT CTTTAAATGG
  CGGGAAGACT AGATACGGCA CATCATGCAG GTTTCTTTAC CCTGCCTTGT CCCCTGTGCA
  AGCCCTGTGC TCTGACTGCT GTCCATGCCC TTCTGATGCA AGTGTGCCAG GTCTGTGTGC
  AACAGCAGAG CACCGTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37545239	NES08893997	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		G		G	G	G	G	G	G	G
ss45339374	mCV22928345	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss148107311	ENSMUSSNP333922	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27339710					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545239	NES08893997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157680607 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	953 bp upstream
Rr568595	regulatory region 568595	149 bp distal
Rr568596	regulatory region 568596	1889 bp proximal