rs27339708 SNP Detail

Summary

• ID
  rs27339708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157680657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGTGCC CACATTAGGA
  ATCTGATAAC ATTATATTAG TGGGGGCAAT GGCTTGGGAA GACAGCTCCT AGAAGGCTAG
  CGAGGATAAG CCGTGCATCC TGCACACAGC AGCACCCAGA AGTAGAAGGA AGGCCCAAGG
  ACAAAGCACC GCCCTGCCTT CTGCCACCCT CCAGCTGCGC ATCCTGGCAA ACTCCCATAA
  W
  CTTTAAATGG CGGGAAGACT AGATACGGCA CATCATGCAG GTTTCTTTAC CCTGCCTTGT
  CCCCTGTGCA AGCCCTGTGC TCTGACTGCT GTCCATGCCC TTCTGATGCA AGTGTGCCAG
  GTCTGTGTGC AACAGCAGAG CACCGTGACC TCTCACCATC AGGATTGCTT GTGACTAGGT
  TCCTCTCAGG CTTCCATTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37545237	NES08893999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27339708					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545237	NES08893999	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157680657 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	903 bp upstream
Rr568595	regulatory region 568595	199 bp distal
Rr568596	regulatory region 568596	1839 bp proximal