rs27339706 SNP Detail

Summary

• ID
  rs27339706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157680940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGCTGT CCATGCCCTT
  CTGATGCAAG TGTGCCAGGT CTGTGTGCAA CAGCAGAGCA CCGTGACCTC TCACCATCAG
  GATTGCTTGT GACTAGGTTC CTCTCAGGCT TCCATTGGCC CCTTCCACTG TTGGCAGTAC
  TTAGTGCTCA TCGATTGGTC TGGCTAGCAG CTGGTCATCC TTAGTTGGAT GTCTCTTTCT
  Y
  AGACAGGCCC TCTAATTAAT GCATCTTGAT TCTAAGACTT GGTCCCCAAC CCATGACATT
  AAAAAATCGG TGCTTGTCAT CTCTGGGTCC CACTGCCTAG CCTGGTGCTT GATGTGTAAA
  TAAGAGCACA ATAAATGTTT GGAGGCTGCT AGTTTTAACA CCTTCCCTGG AAGATTTCAT
  GAAGGTCAGC ACAGGCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37545235	NES08894001	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T		C	T	C	C	T	C	C	T
ss45349398	mCV22928352	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss148107315	ENSMUSSNP4779781	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27339706					SNP	C	C	T	T	T	T	T	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545235	NES08894001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157680940 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	620 bp upstream
Rr568595	regulatory region 568595	482 bp distal
Rr568596	regulatory region 568596	1556 bp proximal