rs27339705 SNP Detail

Summary

• ID
  rs27339705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157681166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTCTAA GACTTGGTCC
  CCAACCCATG ACATTAAAAA ATCGGTGCTT GTCATCTCTG GGTCCCACTG CCTAGCCTGG
  TGCTTGATGT GTAAATAAGA GCACAATAAA TGTTTGGAGG CTGCTAGTTT TAACACCTTC
  CCTGGAAGAT TTCATGAAGG TCAGCACAGG CTTGAGCCTC TCCCCAACTT GCTAAAGGCA
  Y
  ATAGCTGAGT AGTTCACACG ATGGTTCTCA GTGATGTATG CCTTTAATAA GGGTCTTTCT
  TCCAGGTTCT TCTGAAGTAG AAGTAAGACC TTTGCTAGGC ACCTTGGATT CTGTCACTCT
  GGCTTAGAGA TGATAGTAGC TGTACCCTCA GGGGCCCAGT ATGCACAGAG CTTCATCATA
  GGTAAGGCTT GCTCAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37545234	NES08893965	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27339705					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545234	NES08893965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157681166 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	394 bp upstream
Rr568595	regulatory region 568595	708 bp distal
Rr568596	regulatory region 568596	1330 bp proximal