rs27339702 SNP Detail

Summary

• ID
  rs27339702
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157681485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTAGA GATGATAGTA
  GCTGTACCCT CAGGGGCCCA GTATGCACAG AGCTTCATCA TAGGTAAGGC TTGCTCAGGA
  CAAGCTTCTG CTGGTACTCA GATTCCTAAT TAATCATCAT GCAAAGGGAG TTCGTTCCCC
  AGTCTGGAAA CTGCCTAGAA CGTCCCCTTT TCTTTCTTAG CAAGTTTTAG ATTTGTCTTA
  S
  ATGCTGGTTG CCTTAAGTCC ATTCTCAGCC CTGTCACCTC AGGACCTGCC CCAAGCAACT
  GCAGTGGCAA TTTAGTCTGG TGGCACAGGT AGCTCACTGC TAATCATGTG CGGTCTTGGG
  CACATTCTAA ATTCTCTCTC TGAGCCTCAG CTGCCTGGTC TATAAAATAG TGGGACTTGA
  ATCACCCACT CTGGCTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37545231	NES08893971	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C	C	C		C	C	C	C	C	C	C
ss45274576	mCV22928358	ABI	CRAMUS_MOUSE	f	SNP		C	G						C
ss148107321	ENSMUSSNP3604800	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27339702					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545231	NES08893971	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157681485 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	75 bp upstream
Rr568595	regulatory region 568595	1027 bp distal
Rr568596	regulatory region 568596	1011 bp proximal