rs27339701 SNP Detail

Summary

• ID
  rs27339701
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157681710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCTGT CACCTCAGGA
  CCTGCCCCAA GCAACTGCAG TGGCAATTTA GTCTGGTGGC ACAGGTAGCT CACTGCTAAT
  CATGTGCGGT CTTGGGCACA TTCTAAATTC TCTCTCTGAG CCTCAGCTGC CTGGTCTATA
  AAATAGTGGG ACTTGAATCA CCCACTCTGG CTGTGTATAA GGGCCAGATG GAAGGACAGT
  M
  GTAGTAAGAC TGCTGCTGCT CTACATCCGC GTGGTGGTCC CACCAACTGT GGATTGAGAA
  TGTGAGACCC ACCAACTGTG GATTGAGAAT GTGAGACACA CCAACTGTCA GTAGTGAGCA
  TGTGCAGTCT CTTTTGAGTG TGTGTCAGTC ATTATTTCTC AAGCAATATA GCTTTCTCAT
  ACAGCTTTTA CATTGCAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37545230	NES08893930	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A	A	A		C		A	A	A	A
ss45205517	mCV22928360	ABI	CRAMUS_MOUSE	f	SNP		C	C					A		A
ss148107331	ENSMUSSNP2984462	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27339701					SNP	C	C	C	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545230	NES08893930	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157681710 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	within coordinates
Rr568595	regulatory region 568595	1252 bp distal
Rr568596	regulatory region 568596	786 bp proximal