rs27339700 SNP Detail

Summary

• ID
  rs27339700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157682285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTAATG AATATGGGAG
  GTTATTTCTG GATTATGTGC AAATACTGTG CTATTTTACT TAAGGGACCT TGGCAGCTAC
  ATATTTTGTT ATCTCTGCCA GGCTCTGGGC CTAATCCCCT CTCAGATACT GAGAGATGGC
  TTTTTATGCC TATCATAGAC CCTACAATTA AATAGTCAGC TTTGAAAAGT GTTAATTCTG
  Y
  CTCATAACAA TATTGCTGGC AGTTTTGTAT ATCTGTGCCT TGGCCACACA ACCCAGCCCT
  TTCTAGAAGT CTTGGGGTGA ACTTGACAAT AGGAGGGCTG TATGTATGCA TGTTTGTTTG
  TGTGCAAGCA CATGGAGAGG CCAGAGTCTG TGTCTCCATT GCTCTCCACC CAAATTTTTA
  AGATAGGGTC TTCCACTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37545229	NES08893905	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27339700					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545229	NES08893905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157682285 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	within coordinates
Rr568595	regulatory region 568595	1827 bp distal
Rr568596	regulatory region 568596	211 bp proximal