rs27339698 SNP Detail

Summary

• ID
  rs27339698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157683156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCACAG TGTGTATTGT
  CTCCTTGGTT TTAACTACTT TAGCATAGGC AGGGAGGATA AAAGAACTGG GATCCAGAAA
  TGGCATCTGA CCTTTACTTC CTGGCTCTCT TTTAAATTCT TATTAAAATA GGCCCAATTT
  TCCTTGTATT GCCTCATTAG GTAGGTGAGT TATTGAGTTT GTAGCCGTTC TAGTTAATTG
  Y
  GCTGTTTTAA CATGGTTCCC CTGGAGGCTG TTAAGAGCTT TGAGGGGGTG AGCTCCCAAG
  CAGTGTAGGT GTGTGGCATG CTTGCTGGGC ATGCGCGTAC ATTTCCACCT TATCCACAGT
  GACAGTGGTT GATAGCAGGT CAGTGCTTTG AAGACGACTT TTCTGTTGTC AGTGAAGGGT
  TTTAAGTGAT TCTAGTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37545227	NES08893889	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C		C	C	C	C	C	C	C
ss45257621	mCV22928369	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
ss148107341	ENSMUSSNP1549921	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27339698					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37545227	NES08893889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157683156 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	within coordinates
Rr568596	regulatory region 568596	within coordinates