rs27338751 SNP Detail

Summary

• ID
  rs27338751
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155596539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG GGATCCCTTG AGCAACAAAA
  K
  GAGGAGGCTG GAGACTCAGG CGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37552190	NES08893919	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T		T		G	T		T	T
ss45285143	mCV23301441	ABI	CRAMUS_MOUSE	f	SNP		G	T			T		T
ss148058410	ENSMUSSNP2860409	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T
ss320575286	CHEV_2_155580355	CHEVERUD	SCREENING_POP	f	SNP											T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27338751					SNP	G	G	T	T	T	T	T	T	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552190	NES08893919	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155596539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			853 bp distal
Procr	protein C receptor, endothelial			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Rr568116	regulatory region 568116			1188 bp proximal
Rr568117	regulatory region 568117			1304 bp proximal
Tssr21121	transcription start site region 21121			326 bp upstream
Tssr21122	transcription start site region 21122			365 bp upstream
Tssr21123	transcription start site region 21123			381 bp upstream
Tssr21124	transcription start site region 21124			436 bp upstream