rs27338750 SNP Detail

Summary

• ID
  rs27338750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155596885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG GAAGGTCGTA GCTCATATGA
  Y
  GCCAAACAGA CTCCCCCAGT GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37552189	NES08893920	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		C		C	T		T	T
ss45303119	mCV23301439	ABI	CRAMUS_MOUSE	f	SNP		C	T			T		T
ss148058425	ENSMUSSNP4895320	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss320575288	CHEV_2_155580701	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27338750					SNP	C	C	T	T	T	T	C	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552189	NES08893920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155596885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			1199 bp distal
Procr	protein C receptor, endothelial			mRNA-UTR
				Noncoding-Transcript-Variant
Rr568116	regulatory region 568116			842 bp proximal
Rr568117	regulatory region 568117			958 bp proximal
Rr568118	regulatory region 568118			1995 bp proximal
Tssr21121	transcription start site region 21121			8 bp downstream
Tssr21122	transcription start site region 21122			19 bp upstream
Tssr21123	transcription start site region 21123			35 bp upstream
Tssr21124	transcription start site region 21124			90 bp upstream