rs27338749 SNP Detail

Summary

• ID
  rs27338749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155597277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGACCAT AGACTTGGGG
  GGAGGCTGGG AGGTCTGTGA TCTCCCTGAA TAGGCAGACT TACTGTAGGC ATTCAAAACA
  TCTTACTAAA TAAAAGAAGT TGTCTGTAAC CAAAATCAAA CATAGTTAAT GTGTCCAGGT
  GTATCCAACT TGGGAAGGGA CACTGGAATG ACAGGGAAGA AAGAACCACA GAAATATCAC
  Y
  GTTGTGAGGT TGAACAATAT GGGAGCAGTG AATTCATAAA TATTAAATTT CTTATTTATG
  TAAAAGGTGT ACTTATATCT TCTATTTTAT TAAAACTTCT GAAAAAAAAA AGTATAGCCC
  ATACCCTTTG CTCTGTTTCC TCATCTGTCA ATCACTTGGT GGCCTCTCTA GGACGTGTTC
  ACAGATCACC AGTAAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37552188	NES08893921	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27338749					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552188	NES08893921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155597277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			1591 bp distal
Procr	protein C receptor, endothelial			mRNA-UTR
				Noncoding-Transcript-Variant
Rr568116	regulatory region 568116			450 bp proximal
Rr568117	regulatory region 568117			566 bp proximal
Rr568118	regulatory region 568118			1603 bp proximal
Tssr21121	transcription start site region 21121			400 bp downstream
Tssr21122	transcription start site region 21122			363 bp downstream
Tssr21123	transcription start site region 21123			343 bp downstream
Tssr21124	transcription start site region 21124			289 bp downstream