rs27338748 SNP Detail

Summary

• ID
  rs27338748
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155597558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTTTAT TAAAACTTCT
  GAAAAAAAAA AGTATAGCCC ATACCCTTTG CTCTGTTTCC TCATCTGTCA ATCACTTGGT
  GGCCTCTCTA GGACGTGTTC ACAGATCACC AGTAAGCTGA CACCATTAGC TATGACATGT
  ACCTCGTTTG ACTCTGTGAG CTGGGAATTC TATTTAAGTT TCCTTCTGAG ACACTGTGAC
  K
  TGAACAAATC GTTCTGGGTC AATCTCAACC CCTTTCTTCA TACACCTTGG AGATGCCGTC
  TTCCTTAAAA TGCCCTCCCC ACCCCTTTAT GGCTATGCCC TGACTTGCAG GGCTTCAAAT
  ATTTATTTCT GGTGGTTTCT GTGGACAAAC AATACAATTT AATATTTAAG AGCATGTATT
  CAGGGCTGGA GAAATGACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37552187	NES08893923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27338748					SNP	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552187	NES08893923	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155597558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12531	CpG island 12531	1872 bp distal
Procr	protein C receptor, endothelial	167 bp downstream
Rr568116	regulatory region 568116	169 bp proximal
Rr568117	regulatory region 568117	285 bp proximal
Rr568118	regulatory region 568118	1322 bp proximal
Tssr21121	transcription start site region 21121	681 bp downstream
Tssr21122	transcription start site region 21122	644 bp downstream
Tssr21123	transcription start site region 21123	624 bp downstream
Tssr21124	transcription start site region 21124	570 bp downstream