rs27338747 SNP Detail

Summary

• ID
  rs27338747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155598269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGCCAC CACCCCAGGT
  TTAAGAACAT TTTAAAATCA GACTTCAGTT TTAAATCTTG GAGCCAGGTA TTTAGTGTCT
  CCAAACTCTT ACTTACTTCA TTCATAAAAG GAATAATAAA ATATTCAAAA AGGATAAACA
  AAGACACCTA CCTCGAGCAG ACCTTATGGA TATTAGGAAA ATCAATACAA GTAGGAGAGT
  R
  CACGTATGGT TTAGGAGTAC GGCTGAACCC CACATTAGCA CTAAGTTTTC CCAGGGAACC
  AACTCCAAGG CATCACAAAG GTTAGGCAGG CTCCTGGCAC TGAAGAGTCT TCTCTGCCCA
  GCTCTGGCTC CTTTTATGTT GTGTTTATTT TAGACAGGCT CTTACTATGT GGGCCAGGCT
  GGCCTTGAAC CTGTGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37552186	NES08893868	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27338747					SNP	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552186	NES08893868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155598269 () rs orientation: forward

Symbol	Name	Function Class
Procr	protein C receptor, endothelial	878 bp downstream
Rr568116	regulatory region 568116	317 bp distal
Rr568117	regulatory region 568117	405 bp distal
Rr568118	regulatory region 568118	611 bp proximal
Tssr21121	transcription start site region 21121	1392 bp downstream
Tssr21122	transcription start site region 21122	1355 bp downstream
Tssr21123	transcription start site region 21123	1335 bp downstream
Tssr21124	transcription start site region 21124	1281 bp downstream