rs27338744 SNP Detail

Summary

• ID
  rs27338744
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155598938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTGTG ATTTAATAAC
  TGGTCAAAGT TAAAAGGAAT ACATCCACGT AGTGTCATGG AGCGACCTCA GTGGGAAGCT
  GTATGACTTC CTTTCCTTTA TCCCCATTTA TAAAATACAA GAGCTATAGT GTCCTTCTCT
  CCTTCCTGCG GTTCCTTTCC CTCTGAGGGA GGCACAGGGC ACCACTCAGT TCAACCTCCA
  S
  AGGGGGTGCC ATTCAGGGAG TCCAGCCAGC AGAGGGCCCC AAGTTACTTC AGTTCCCAGG
  TGACCGACCA CTTTAGCTGC AGAGAACACT CAGCCCAGGG TTGTGCCTGT CCTGTGACTG
  CCCTCCTCCT GTGACTGGGC AAGGCAGAGG CATGAACATT CAGCTGTGCC CAATTACTCC
  AGAGCTCTCC CCGCCAGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37552183	NES08893854	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27338744					SNP	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552183	NES08893854	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155598938 () rs orientation: forward

Symbol	Name	Function Class
Procr	protein C receptor, endothelial	1547 bp downstream
Rr568116	regulatory region 568116	986 bp distal
Rr568117	regulatory region 568117	1074 bp distal
Rr568118	regulatory region 568118	within coordinates
Tssr21124	transcription start site region 21124	1950 bp downstream