rs27337516 SNP Detail

Summary

• ID
  rs27337516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159285547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA GGGAGGGAGG
  GAGGGAGGCA GGGAGGGAGG GAGGGAGGGA GAGAGAGGTG TTTCCCCTCA CTTCAAGGCT
  GATCTTCACA GCTTCTGTTG TAGTTTTTGT TTTTGTATTT TCTCTATAGC TATTTGGGAC
  AGAACTCTAA CCTTCTCTTG AGGGTGACAC AAAAGTTCCC CACTATCTGC CCATCCTCTA
  R
  GGTATCATCA TTGTATGTTT TAACCTAGAA CTCCTGTTAG AGGAGAAATT GAGACTCCTT
  AAACCTCTGC CCCTGAAGAA ATAAAAAGAA GGCAAGCGTT TGCACAAAAG AGCATTTTTT
  CAAAGGCCGG TAGGAGGCGC TTCTGATGAG AGGAGCCTTT GTGTGGCTAG AGCTCTGCTC
  GGGCTAGTAG CTTCAGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ
ss37538146	NES08890903	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ
rs27337516					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37538146	NES08890903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159285547 () rs orientation: forward

Symbol	Name	Function Class
Rr568916	regulatory region 568916	32 bp proximal
Rr568917	regulatory region 568917	123 bp proximal