rs27336166 SNP Detail

Summary

• ID
  rs27336166
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159574099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGGGA GGCAGAGAAA
  ACTAACAACG TAAGGCCTCC AATCTAAAGA CAGAGTCCAC TAATCCTGAG TTGCACTTCT
  GGCACGGGAC GGTGGCCCTC CCACTTCTCA ACCGGGGGAT TCTTTGCTAC CTGCCTGCCC
  ACCCAAGGGC CCAGCCTCAG AATAACCCTC AGCCCTCATC TGATCTGTTA CCAAAGAGAC
  M
  GAAATAAGGA GGCTTGAATG CAGCACACAC ACTGATTTCC TGGGTAGCCA GTTTGTGTCT
  TTCATGTCTC AGTGCTATTT TGAGGGAAAA ACAAAAACAA ACAGACGAAT TTACTGAACA
  GGAGGAAAGG GCTGCTTCAT TTGTTGCTAA TGGGTGCTCT AGGCTTTGTG GGTTTGCCTC
  TTGGAGGGCA GGCAGTTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37536291	NES08901318	PERLEGEN	MM_PANEL2	f	SNP	C			A	A	A	A	A	A	A
ss45217527	mCV23572388	ABI	CRAMUS_MOUSE	f	SNP		C	A			A
ss148137466	ENSMUSSNP106971	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27336166					SNP	C	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536291	NES08901318	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159574099 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	1674 bp upstream
Rr568937	regulatory region 568937	117 bp proximal