rs27336164 SNP Detail

Summary

• ID
  rs27336164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159574323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACT GATTTCCTGG
  GTAGCCAGTT TGTGTCTTTC ATGTCTCAGT GCTATTTTGA GGGAAAAACA AAAACAAACA
  GACGAATTTA CTGAACAGGA GGAAAGGGCT GCTTCATTTG TTGCTAATGG GTGCTCTAGG
  CTTTGTGGGT TTGCCTCTTG GAGGGCAGGC AGTTGTCTCC CAGCCAGAGT CCTCCTGACT
  Y
  TGGCATTTAA CAGGGTCTGC CTTCAGTGTC TTAGCCAGGG TTTCCTTTGA GAGTAAACAG
  CCCCTTACTA CTTACTGCCT TTTACACCAC CAAGAAAATG AGATTACTCT GAGAGGAGAC
  AGCAGCTCCA GGCTGCTGTC GAAAGGGCGC TCTGACTGTT TGTTTGGCTG AAAGGCACCA
  CACAGCACAG CTCAGGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37536289	NES08901320	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C	C	C	C	C	C
ss45382603	mCV23572389	ABI	CRAMUS_MOUSE	f	SNP		T	C			C
ss148137483	ENSMUSSNP4411245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27336164					SNP	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536289	NES08901320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159574323 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	1898 bp upstream
Rr568937	regulatory region 568937	within coordinates