rs27336160 SNP Detail

Summary

• ID
  rs27336160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159575545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGACAGG GCAATTTTAT
  TAGACATGTC ACCACCTTTC CAACTTAAAA ACTCTATCTG CTAGGAAAAG CTCCCAGAAC
  AACTTTCCCA CCCATCGCAC AGAACACAAA GAAAGAGAAG CAAAGTAGCC ACCAGGACTA
  AAACTCACGC AGGAGGCCAG AGTCAAGAGT CAGGGGTGTC AAGGAGATGA TAGCCAACTT
  K
  GGTGGACCCG CCATTTATTA TTACAAATAG GTAATTTACT CAAAAACTCT GATTGGAAGT
  GAAAAGTGTT CTGCGAGGGT TCTTTCTTGT GAGTGCAGTC TCTGTGAGGC AAGGATGATA
  TTCATTTTCT TATTGCAATT TTTGGTAGTA GCATCATTGG GAAACCACCT GTAGATCTAG
  GAAGGAGAGG TATTCGCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	KK/HlJ	WSB/EiJ
ss37536285	NES08901239	PERLEGEN	MM_PANEL2	f	SNP			T	G
ss148137522	ENSMUSSNP5041868	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	KK/HlJ	WSB/EiJ
rs27336160					SNP	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536285	NES08901239	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159575545 () rs orientation: forward

Symbol	Name	Function Class
Rr568937	regulatory region 568937	740 bp distal