rs27335864 SNP Detail

Summary

• ID
  rs27335864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157935229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGTGTG CATGTACATA
  TATATATGTG TGTGTGTGTG TGTGTATGTA TTCAGTGTGT TTGATGACTC TTAACTTTGT
  GGCAGTTATG GGTGCTGCCA TAGTGCTTGC AGAATTGCTC TGAGGAGGCC CAGCCTCCTG
  TGTGACCTGA CTTGCTCCTC CATAGCGTAG CACAGGGACC AACCTGTTCT CACCTGCCTC
  Y
  ATAAGTATGC TTTTCCAAGA ACACAAACCC ACCTGTACAC TTACATGTGG CTGCAGCTGC
  TTTGCCCATG GCCTAGCTGG ATGGTTTAGG CAGACACTGT GTCCTACATT CCTTAAAATA
  CTTTGTCCAA CTTACTTGTC CTCTTGCCAC ATCCCAGGGT GGATGACACA GCAGTTAGCA
  CTGTGTCTGC TGCAAAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544316	NES08896932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335864					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544316	NES08896932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157935229 () rs orientation: forward

Symbol	Name	Function Class
2010009K17Rik	RIKEN cDNA 2010009K17 gene	1512 bp upstream
Rr568641	regulatory region 568641	within coordinates
Rr568642	regulatory region 568642	814 bp proximal
Rr568643	regulatory region 568643	1986 bp proximal
Tssr27200	transcription start site region 27200	1553 bp upstream
Tssr27201	transcription start site region 27201	1514 bp upstream