rs27335859 SNP Detail

Summary

• ID
  rs27335859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157935524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTGTCC TACATTCCTT
  AAAATACTTT GTCCAACTTA CTTGTCCTCT TGCCACATCC CAGGGTGGAT GACACAGCAG
  TTAGCACTGT GTCTGCTGCA AAAAGCAGTA GTCTAAGGAT GTCAGCCTCT GTGTGGTTGC
  CAAGAAACAC ACCCCGTGCA GGCACTGATG AAACAGTAGT TTACATGAGA ACAGTCAGCT
  S
  GGGTCTATGG TGAACACTGC TCCCCCGGGG TCCTTTGCCT GGGACCAGCT CTGGGCAATG
  ACTTATAGCA TGGCCCAGCC CCCTCCGCAG GGCCCTTTAC AGGACAGGCT TGGCAGAGCT
  CTGGCTTCGA GTGGCATGCT CTTCACACCA GCAGAGACTG TGGTGGCCCT GGATTATCTT
  GCTACTAATT AATGAGGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544311	NES08896941	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335859					SNP	C	C	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544311	NES08896941	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157935524 () rs orientation: forward

Symbol	Name	Function Class
2010009K17Rik	RIKEN cDNA 2010009K17 gene	1807 bp upstream
Rr568641	regulatory region 568641	within coordinates
Rr568642	regulatory region 568642	519 bp proximal
Rr568643	regulatory region 568643	1691 bp proximal
Tssr27200	transcription start site region 27200	1848 bp upstream
Tssr27201	transcription start site region 27201	1809 bp upstream