rs27335852 SNP Detail

Summary

• ID
  rs27335852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157936214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCCCCA ACCGGAAGAC
  TGCAGATCTG ATCCTAAGTC CTTTCAGACT TCCCAGGAAG CTCTCTCTGG AGGTGAGCAC
  CGCCTGCCTG CCGCACAGAA AGGAAGGACA CAGGAAGTTA GAAGCAAACG TTCACTCTAG
  GTCCCTGTGG GCTCAGATTT CAACCTCATC ATTTAACTGA CGTGGGCTTC ATTATTCAAA
  Y
  GATACGTAGG TGTATGCAGC AGGGGCTTGA ATACATACTG CTCACCTAAG CCAAGCTACA
  TATTTCTGAG GAAACTGTTT GCTGATGCAG AATGCGGGCG GGGGATGATG GGGGGAGCCG
  GGGCGGGGAG AATAGCCTGA GATGAGCTCC GGCTGGATGC AGCCTTTCTC CTCTGGAGAG
  ATTGCTGTAA GAGCTCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37544304	NES08896959	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27335852					SNP	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544304	NES08896959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157936214 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	528 bp distal
Rr568642	regulatory region 568642	within coordinates
Rr568643	regulatory region 568643	1001 bp proximal