rs27335846 SNP Detail

Summary

• ID
  rs27335846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157936929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCAGAT CCCCTCCAAG
  ATCCAAAATT AACATTTTTG TTGGTCCTAA GATGGGGTTA ATTGATAATC TTGGTAGGGA
  CAAGACCACT TCTATTTTAA AGCTGGACGC TCACCAAGAA CTTGATAAAT GGTGTCCCAG
  ATTTCCCAGG CTGCTTTCTG ATGAACTGCT CAGTGCCCTG ACATTGCTTA GGATCTGCCC
  R
  TCTCTGATGA AGCTGGGAGT CAACCCAGAT CAGCACCATA TGGGAAACTT GGTCATGGCT
  CAAGAATCCA GAGGAGGTCC TCCAAACACT TTTGATATTT GCCGAGGTTG CCTGCCGAAC
  TTCAGAAGGG CCGAGCAGAT GTGGCCCTGG TGTACCCAGA GCACAGCTGC ATCTGGACTT
  CATTGTCATG ACCTAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544298	NES08896967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335846					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544298	NES08896967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157936929 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	1243 bp distal
Rr568642	regulatory region 568642	within coordinates
Rr568643	regulatory region 568643	286 bp proximal