rs27335845 SNP Detail

Summary

• ID
  rs27335845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157937439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTACAGA TGGTTGTGAG
  CCACCATGTG GTTGCTGGGA TTTTGAACTT AGGACCTTTG GAAGAGCAGT CAGTGCTCTT
  ACCCACCGAG CCATCTCTCC ACCCCCCACT TTGGCTTTCT TATCTGCCTC AGCCTACATG
  AGCAAGAGAC GCTGGCAATG AAACAATTGA AGTTTGTGTG GCCGGTAACA GACATTCTGA
  Y
  ATGACCTGTT TCTGATATAC CATGGCTTAA AACCAGGTTC TCTCTCACCT CTCTAGCCCT
  CTCCTACAAG GGGACAACTA GTAGTCATCA CCCTGTTGCT AGAGGCATCC TCTTAAGCCA
  TCTGGGAGAA GATTGAGAGG GAAACAAGTC TCAGCTGTGA TAAAAGAGAG GCCGTAAATG
  CCCTAGGGCT GGGGAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37544297	NES08896923	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27335845					SNP	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544297	NES08896923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157937439 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	1753 bp distal
Rr568642	regulatory region 568642	100 bp distal
Rr568643	regulatory region 568643	203 bp distal