rs27335844 SNP Detail

Summary

• ID
  rs27335844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157937588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTAGCC CTCTCCTACA AGGGGACAAC TAGTAGTCAT
  CACCCTGTTG CTAGAGGCAT CCTCTTAAGC CATCTGGGAG AAGATTGAGA GGGAAACAAG
  K
  CTCAGCTGTG ATAAAAGAGA GGCCGTAAAT GCCCTAGGGC TGGGGAGGCT GAGAGGGATA
  AAGAAAGGAT AAAGAAAAAG TGGTACTCCC CCACAGTGGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544296	NES08896924	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335844					SNP	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544296	NES08896924	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157937588 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	1902 bp distal
Rr568642	regulatory region 568642	249 bp distal
Rr568643	regulatory region 568643	352 bp distal