rs27335843 SNP Detail

Summary

• ID
  rs27335843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157937602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGAAGT TTGTGTGGCC
  GGTAACAGAC ATTCTGACAT GACCTGTTTC TGATATACCA TGGCTTAAAA CCAGGTTCTC
  TCTCACCTCT CTAGCCCTCT CCTACAAGGG GACAACTAGT AGTCATCACC CTGTTGCTAG
  AGGCATCCTC TTAAGCCATC TGGGAGAAGA TTGAGAGGGA AACAAGTCTC AGCTGTGATA
  R
  AAGAGAGGCC GTAAATGCCC TAGGGCTGGG GAGGCTGAGA GGGATAAAGA AAGGATAAAG
  AAAAAGTGGT ACTCCCCCAC AGTGGAGTTT ATTCTGCCAT AAAGAACGAG ATTGTGGAAC
  TTGCAGGGGA GTGGGCGTGA TCTTCAGTAA AGCATGCCCA ATCCAAAAAG ACAGAAAGTG
  TTTTCTCTAA TACACAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544295	NES08896925	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335843					SNP	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544295	NES08896925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157937602 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	1916 bp distal
Rr568642	regulatory region 568642	263 bp distal
Rr568643	regulatory region 568643	366 bp distal