rs27335841 SNP Detail

Summary

• ID
  rs27335841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157938359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCATCGG CAGAGGGTCT
  GATTTTCCTA AGGGAAGCTG GGACCCTCGG TTTTCATGTG AAAGCACTTG GTTTCAGAAT
  ACCAGTTCCC CACTCTTGTT AGAAATGGTC CCCTCCTCTG GAGGTCAGTG TCAGAGGTCC
  ACACAGTGGG CTGTGGTCTA GGGACGACTC TATTCTAGGA ACAACCTGCT AGTCGTTGAG
  Y
  GGAGCTGAGT CCCATCCTAC CTGAGTGCAA GGGGCCCAGG CTTGGAGTTT ATTTAACCCT
  GGAGCCCAGG CTTGAAGTTT AACCCTGCTT TCAAGGCTCA TATCCCGCTT TGGAGTTGGC
  CTAGAATATC CCAGGCCCCG ACCAGTTCTA AAGGTTTAGA ACCTTTCTGG AGAACACTCA
  AAGAGGTGGA GCTTAGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37544293	NES08896915	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335841					SNP	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544293	NES08896915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157938359 () rs orientation: forward

Symbol	Name	Function Class
Rr568642	regulatory region 568642	1020 bp distal
Rr568643	regulatory region 568643	1123 bp distal