rs27334378 SNP Detail

Summary

• ID
  rs27334378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160796558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAACCC TCGTAAGAGA
  TCCCAGAGAG CTCATCTGTC ACACACACCA TGTGACCCCA TGGAGGATGC AGCAAGATGG
  TTATGAATAC TGGACCCTCA CTAGATACTC AACCTTCAAT TTCTCAGCCT TGAGAATTAT
  GAGGAATAAG TTTCTGTTGT TTATAAGCTT TTTGGTACAC CCACTTGAAT GGTTTAAGAG
  Y
  TCCTTTGGGA GAGAAGAGGC AGTACACCCT GGCAGAGCTG TGGAGAACCA CTGCCCACCT
  ACGTGTTGGG AAGACTGAGT GGCTCTGAGG GCCAGGCAGA CAAAAGTTCC CTATTCTTGC
  CTCAGCGTAG AAAAGGAACC TCAGAGACAG GGAATGTGAT TTCATAAAGG AAGGAGATGT
  GCCACAGAGA TGAGGTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532001	NES08866775	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27334378					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532001	NES08866775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160796558 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd6	chromodomain helicase DNA binding protein 6			Intron
				Noncoding-Transcript-Variant
Rr569112	regulatory region 569112			797 bp proximal
Rr569113	regulatory region 569113			889 bp proximal