rs27334377 SNP Detail

Summary

• ID
  rs27334377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160796938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACAGAG ATGAGGTTGC
  TGGCAAAGGG TCAATGCTTG TAAAGGGTAA TGAACATTAA TTCCCAGGGA CTATGAAGGA
  AACTGTTGGG CATGTAGAAA GAAACAAGGT CAACGGCATG TCTGTAAACC AACAACTCCG
  GGGATGCAAC AGGACAGGAA ATGGAGGTCT TTCCCTGACC TTTCTCAAGA CACTATACAC
  Y
  GAGGCTCAGG GGAAGACTGG ACAAGTGTAG GTAGGATGGA AACAGAGCTG TGTCAGCTGA
  TAACACACGG GTTAAGAACG GCCTTTCCGA GAGGAAGAGG TAAGGTAGGG AGGATGACCT
  TTCACCATGA CAGGTTTGAG GGATGGACCA GTCCTGTCCT GAAGCAGTGG TGGCAGCACA
  TACAAATGGG TAAAGGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532000	NES08866776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27334377					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532000	NES08866776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160796938 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd6	chromodomain helicase DNA binding protein 6			Intron
				Noncoding-Transcript-Variant
Rr569112	regulatory region 569112			417 bp proximal
Rr569113	regulatory region 569113			509 bp proximal