rs27334371 SNP Detail

Summary

• ID
  rs27334371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160799185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCCTG CTGCCTCAGC
  CAGTCAAGTA GGCTCTTGCT GGGAACAGCT TTCTCAGCCT GGCTGCTGGC TGCTGCTGTT
  GGCTCAGGAG CTGAGGAAGT AGCTCCTGGC ACTTCAGGGT GTGTGGTGCT CAGGGTAGTC
  TGCCCTGCAT CTTCATGGAC TTCCTGGATT AAGACAAAAT GAGTAATAAT GATGGCAGGA
  Y
  GAAGTGAGTT CCTGAAACAC ACATCTCTAC ATTGCTCATA CCAGTCACAG GTCTATGGGA
  GAACATGGGG TATCTGACTT TTCCAGCTGC TCCCACCCCA TCTTCACCAC TGGGTGCTTG
  GATTTCAACC ATACCACTGA CTCCTCACTG CTCTTATACA TTCTAGGTGC TCACCTTGGA
  CCTCCCTGTC TACTCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37531994	NES08866733	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27334371					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37531994	NES08866733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160799185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd6	chromodomain helicase DNA binding protein 6			Intron
				Noncoding-Transcript-Variant
Rr569112	regulatory region 569112			1503 bp distal
Rr569113	regulatory region 569113			1717 bp distal
Rr569114	regulatory region 569114			155 bp proximal