rs27334368 SNP Detail

Summary

• ID
  rs27334368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160799454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCTGAC TTTTCCAGCT
  GCTCCCACCC CATCTTCACC ACTGGGTGCT TGGATTTCAA CCATACCACT GACTCCTCAC
  TGCTCTTATA CATTCTAGGT GCTCACCTTG GACCTCCCTG TCTACTCAGC AGGCCTGACC
  TCACCCTAAT TTCCATTCCT TTATCACCAC CTCTCACTGT CCTAGGCACC TCCTCCTCTG
  W
  CCTAGGCACC TCCTCCTCTG ACCTAGGCAT TTCCTCCTCC TCTGACCTAG GCACCTCCTC
  CTCTGTCCTA GGCACCTCCT CCTCTGACCT AGGCACCTCC TCCTCTGTCC TAGGCACCTC
  CTCCTCTGAC CTAGGCACCT CCTCCTCTGA CCTAGGCACC TCCTCCTCTG ACCTAGGCAC
  CTCCTCCTCT GTCCTAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss37531991	NES08866736	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs27334368					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37531991	NES08866736	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160799454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd6	chromodomain helicase DNA binding protein 6			Intron
				Noncoding-Transcript-Variant
Rr569112	regulatory region 569112			1772 bp distal
Rr569113	regulatory region 569113			1986 bp distal
Rr569114	regulatory region 569114			within coordinates