rs27329733 SNP Detail

Summary

• ID
  rs27329733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166026328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATATTA TTAATTAAGA
  CCAGAAAACA AGAATAGGCA TTTGTCTCAT CAGGTTACTA GGCTAGGTGT ATTATATGAC
  AAACCACTGT CCTTGAAATA GCTAAATCTT GTGAACCTAT TGTTATTCAA TAATAACTGG
  CATATGGTGC TCACAGTAAT AACGGTCAGG AAAGGCCATT CTGCAAGGTC ATGGCTGAGC
  R
  AGCTGTAGGG ATTTCAAGGG GACAGGGTTC CTGACGACAG TGAGTGCGTG CCTTTATAGT
  GTGTAGGAGT TTTGCAAGGC AGCAGCAGGT CTGGGCAGAG TGGGCAGTGA GATGCAGTGG
  GATCCAGTCA AGGAGTCAGG ACTGTATGGC ATTGGGAGGG TTAACAGGAG GTCTGTGCCT
  ACCATGTGGA AAGTGGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512155	NES08851922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329733					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512155	NES08851922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166026328 () rs orientation: forward

Symbol	Name	Function Class
Gm11466	predicted gene 11466	within coordinates
Gm30320	predicted gene, 30320	1428 bp downstream
Rr367371	regulatory region 367371	142 bp upstream
Rr570163	regulatory region 570163	1779 bp distal
Rr570164	regulatory region 570164	115 bp proximal
Rr570165	regulatory region 570165	193 bp proximal
Rr570166	regulatory region 570166	1475 bp proximal