rs27329723 SNP Detail

Summary

• ID
  rs27329723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166027638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCTCCC AGGCATGCGC
  AGAGTTCTGC AGCATAGCTG GACCTGCACC CAGCGCCTCC TGCTTGGTAG CACGTGCATC
  TGTAAATGGG AGAAGTACGG TTGAGTTTGC CAGTTCCTGT CAGCGGTTCC TTCCTTAGGC
  TCCCTGCCCC CAGCTCCTGT ATGTAGCTGA GAGACCATTC TCAGGATGTC CACAGTAGAG
  R
  AGAACCTGAA TGTAGCGAAT GAGTGCCTTC ATAGACAAAA ACTTAGTTCA CGTAGTTAAT
  TGTGGATAAG ATTAATCCTC ATTGTGTGGT TGCGAAGGCT TTTCTTAACT GAGTTAGTTG
  TGGTGGGAAG GCCTGCCCTG TGTGTGGGCT GCAACATTTC ATAAGCTGGG CTGTGGATCG
  GATGGAAAGG AGAGAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512145	NES08851935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329723					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512145	NES08851935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166027638 () rs orientation: forward

Symbol	Name	Function Class
Gm11466	predicted gene 11466	within coordinates
Rr367371	regulatory region 367371	985 bp downstream
Rr570164	regulatory region 570164	1016 bp distal
Rr570165	regulatory region 570165	1096 bp distal
Rr570166	regulatory region 570166	165 bp proximal
Rr570167	regulatory region 570167	1335 bp proximal