rs27329718 SNP Detail

Summary

• ID
  rs27329718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166028607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTAAGG AGTCGCTTGA
  CTGCTTGGGC CGGGTAGGAC GGTGTGACTG AGTGTCCAGG TCCTCGCTGT CCTGTTGTAG
  CGGACTTGCA GGCCAAGACT CACTGGCATT CCCGTTCTGT TTTGTGTTCC CTCGCTGAGT
  ATGCCTCCCT CAGCTGCTTC TTGATTAAGT GACCCTCAGT TGATCTGGTT GGATGGTACC
  Y
  TGCTTCCTGT TGGGATAAGG CTAAGGTTGA GAACGTGGGG ATGGGGGCGG GACATATTTT
  GAGAACTTGG GAACTTTGAA ATGTGCCCAG GGCTCAGGGC CAAGGGCAGG GCTCTTGGAT
  GGCCCAGAAG TGCGAACATT CTATGAACAT CTGAGTTCTC AGTGGGGTTT GTGGGGGGGT
  CAAGAATGGC GCTTCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512140	NES08851850	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329718					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512140	NES08851850	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166028607 () rs orientation: forward

Symbol	Name	Function Class
Gm11466	predicted gene 11466	within coordinates
Rr367371	regulatory region 367371	1954 bp downstream
Rr570164	regulatory region 570164	1985 bp distal
Rr570166	regulatory region 570166	within coordinates
Rr570167	regulatory region 570167	366 bp proximal