rs27329472 SNP Detail

Summary

• ID
  rs27329472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165313700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGCTGA GCAGACTGCC
  GAAGATACTG CTGCAGAGCC TGGCCGGAGG CCTTTCCTTA TCAGGCAGGC CACAATCCCT
  GACATCTACT CAGCTAACAC AGGTTAAGGT GGCTGTGGCT GCCCCATCCA GTTAGACCCA
  AGGTGGGACT GTCCCTGTCT TGGCACGACC TCACCCGAAA CCCATGCTGG TGGGTCTGCT
  Y
  TTGTGATTTT TGCCTCTGGG GTAGAGCACA CAGCAACCAT GGTCCCTGCA GGCATAAGGT
  TCCTATGCAT CCACCGTCCC TATCCAGACA TCTGTTGGCC ACAAGACTGA TGTCCTGGCT
  TGACCTTCCA CCTTTTCCTG AGCCGATCAC TCTAGCCTCA ACCGACCGCA ACACTGATTC
  CCAAAAGTAA AGAGACGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	PWD/PhJ	WSB/EiJ
ss37514197	NES08887194	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T		T	C	C
ss45376822	mCV23743206	ABI	CRAMUS_MOUSE	f	SNP	T	C				T	T
ss148240385	ENSMUSSNP1111885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	PWD/PhJ	WSB/EiJ
rs27329472					SNP	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514197	NES08887194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165313700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	1028 bp proximal
Rr569924	regulatory region 569924	1488 bp distal
Rr569925	regulatory region 569925	1313 bp distal
Rr569926	regulatory region 569926	242 bp proximal
Rr569927	regulatory region 569927	1320 bp proximal
Rr569928	regulatory region 569928	1440 bp proximal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	Intron
Tssr27627	transcription start site region 27627	1407 bp downstream