rs27329383 SNP Detail

Summary

• ID
  rs27329383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165346346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCCACA GACATGGTCG
  CTTTGGGGTG TTGAGGCTGT TGGGGGCTCT GAGGGGACTC CAGTTCTGCA AACTGAGTCA
  TAGACCCCGG AACCAAGCCA GCCAGCAGGT CGCTGAGCAC CTCAGTGCTC GGTATTGCCC
  TAGGGGCAGG GCACTGACAG GGACAGATTA AGATGGAACT CCTGGGCTGG ATTTGACTTC
  R
  GTGAGAGGAG ACAGGTCCAC TAATGCAGAG TTCCAGCCAG GAGGACAGGG GGTCAAGATT
  TCTGTTATCT TTTCTGGATT CAGAAACTTA AATGCCTTTA GCATAGTCAG TTTCTCATTC
  TTCAGTGGGC ATGAGGTTCA GAGCACGCGC AGGGAGGGGC TGGGACACAC AGTGAAGAAA
  GAGACTCTGC TCTCAGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514105	NES08885786	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329383					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514105	NES08885786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165346346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12710	CpG island 12710	327 bp distal
Rr569936	regulatory region 569936	629 bp distal
Rr569937	regulatory region 569937	within coordinates
Slc2a10	solute carrier family 2 (facilitated glucose transporter), member 10	Intron
Tssr21725	transcription start site region 21725	513 bp downstream