rs27327809 SNP Detail

Summary

• ID
  rs27327809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166493590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGCC CTCAGACAGA
  TGAAGAGCCT GAGCAGGCCA CACTCTAGCA GCAGGAGGTG CTGGAATCGC TTGCTGGAGA
  CAGTAAGCCC ACAGTCTATC GCCTGCCTTC CTGTGGCTGT AGCAAACATC ACTACTCAAT
  CACCTATTTT TCCTGTTCTG CCATAGCTCT AGGGACCTTG AATACTTGTG CATCAAGAGC
  Y
  CTGCTTCCTA GAGCCTCCAC CTCTCGTCCT ATCGCCCAGA AGGTAAGGGT CCACCTCCCC
  ACATGGCACG AGGTGTAGGT GACTCCACAA GGTGACTTGT GCCACAGCTG TCTCTCCTCA
  CACACCCAAG CGTTCTGGTG TGTCTTCCTA GCCAGCCCAC TTCTCTGAAT GAGTCATGTG
  TGCTTACTGG GGACTCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37510034	NES08856669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27327809					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37510034	NES08856669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166493590 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			823 bp distal
Rr570328	regulatory region 570328			within coordinates
Rr570329	regulatory region 570329			136 bp distal
Rr570330	regulatory region 570330			1113 bp proximal
Rr570331	regulatory region 570331			1732 bp proximal