rs27323264 SNP Detail

Summary

• ID
  rs27323264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157148292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCCATTGA CACGGGGCTG GCTGTCAGGG GAACAGGGCT
  TGGAAGCTTT CATTAGCATT AATTGCCTCT AATGCACCAT CATTTTTGAC AGTAATAAGC
  Y
  AAATGGGGAG TTATTACTCT CAGCAGAAAG ACCACATTTC CTGGTGTTTA AAATTTTTGG
  GGGTATATGT ATATAGGATA CACTGCAAGC AATGAAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37546994	NES08889777	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C	T	C		T	C	C	C		C
ss45351229	mCV24816133	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss148096449	ENSMUSSNP5856830	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320585480	CHEV_2_157132108	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27323264					SNP	C	C	C	T	C	T	C	C	C	T	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546994	NES08889777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157148292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			266 bp proximal
Rr568467	regulatory region 568467			1548 bp proximal