rs27323261 SNP Detail

Summary

• ID
  rs27323261
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157148424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACATTTCC TGGTGTTTAA AATTTTTGGG GGTATATGTA
  TATAGGATAC ACTGCAAGCA ATGAAAGGGG TGGTGTGCTC TCCTGTGTAA AGCAGGCCCG
  K
  GTATTACAGT GGGCACACAG CCCCTTTCCT GTTTGAGACT AACCCCACAA CACTGGTTTG
  AAGGAAGAGT TAACCAACTG GGACCCTACG GAGTCTTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37546991	NES08889780	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T	G		G	T	G		T	G	G	T		G
ss45353463	mCV24816123	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss148096459	ENSMUSSNP5871869	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
ss320585482	CHEV_2_157132240	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27323261					SNP	G	G	G	T	G	T	G	G	G	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546991	NES08889780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157148424 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			134 bp proximal
Rr568467	regulatory region 568467			1416 bp proximal