rs27323260 SNP Detail

Summary

• ID
  rs27323260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157148593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAACCAAC TGGGACCCTA CGGAGTCTTA AAACAGGCCT
  GCGAAAGTTA TGATTTTTAT TGCACACTTT GCTGTAAAAG AGTGGCATAG AAATGCTTTT
  Y
  TTATGAGTGT TTCCAGAAGT CCATTTGTTG TGAGATATTT TTAGGAGCAA AGGTTTGTTT
  TAAGCTGTTC TGTCTACTCG CTAACAGTCC TGCAGTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37546990	NES08889781	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T		C	T	C	C		C
ss320585483	CHEV_2_157132409	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27323260					SNP	T	T	C	T	C	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546990	NES08889781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157148593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			within coordinates
Rr568467	regulatory region 568467			1247 bp proximal