rs27323258 SNP Detail

Summary

• ID
  rs27323258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157148822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGATAT TTTTAGGAGC
  AAAGGTTTGT TTTAAGCTGT TCTGTCTACT CGCTAACAGT CCTGCAGTGT TTCTGTACAG
  CAGGGTGTTT TGGCAGCCTT TTAAAATAGG AAAGCAAACT CAAACTACTC AAGTTCATTC
  CAGTTTGCCG TTCCTTGTGT GCATTCCTTG TGTTTGTATA GTCTGGGAAT GTGTGAGGTG
  S
  ATTCCTTCAG AGTAAACATT CAATGGAGTC TTGATGAGCA GGCTCTGATG GCTGTGTTTC
  TGCTCTTGGT TAAGAAACTT GATGGCTTCC TTATGGCTAT GTTTAGGATA CTCTGAAAGA
  GCCCTGTCTG ATTCTTATCT ACTTGTCTGT CTCTATCTAC TGAGAGAAAA AAAAGATTAC
  TTTGAATATT AAATGTATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546988	NES08889783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323258					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546988	NES08889783	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157148822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			within coordinates
Rr568467	regulatory region 568467			1018 bp proximal