rs27323256 SNP Detail

Summary

• ID
  rs27323256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157149088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTAAGA AACTTGATGG
  CTTCCTTATG GCTATGTTTA GGATACTCTG AAAGAGCCCT GTCTGATTCT TATCTACTTG
  TCTGTCTCTA TCTACTGAGA GAAAAAAAAG ATTACTTTGA ATATTAAATG TATTCTTTGA
  CAATTTCATA CATGCACACA GTGCATACAG ACCCTCTCTC TTAGTCCTCT CCCACCCTTG
  Y
  CAACTCCTCT CCTCTCTACA AGTCTCCCTC CTATTTTTAC ATTTTTGTTG TTTCTGTTTT
  TGCCTGTTTT GAATTTTAAA AACAGGAATT AAATATACAT ATAGATGTGT GGGTTTTTTT
  TCAAAGTACA GGAAAATAAT AATGAATATG AGTCTTTCTC CATGCTCTCA GTTCAGTCAT
  CCTCAGAGAA GTCTATCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546986	NES08889785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546986	NES08889785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157149088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			within coordinates
Rr568467	regulatory region 568467			752 bp proximal