rs27323249 SNP Detail

Summary

• ID
  rs27323249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157151058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTACTT GACTAACAGT
  ATGGAGATTC GCCATGGCAT CTGACATCTG CGTGGGGAGG GTTACTGCAC GCAAACTTAG
  TAGGAGGCAG AGCCCGATCG GGATTCTGAT CCCTGAGCAG CATATCATGC CCTCTGCAGT
  CTCTGATGCC CAAACCCGAC ATAGCACTGC CTTCCCGCTG TGTAGAATGA CATGGCTTTA
  Y
  GGAGCCAGGG CCTTCCATAG GGTACATGCC GAGTAAATCC TTGCAGTCAG CAGGACTTCC
  CGGCATGAGT TATTTAGACG TTACTTAAGG ACTGCTCCGT GTTTGGTTGG TTGGTTGGTT
  TTTGGTTTTT TGAGGTGATC TGTATAGCCT TGGGTGTCCT GGAACTTGCT CTATAGACCA
  GGCTGACCTC GAAATCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37546979	NES08889743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27323249					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546979	NES08889743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157151058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			1958 bp distal
Rr568467	regulatory region 568467			940 bp distal