rs27316378 SNP Detail

Summary

• ID
  rs27316378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162954682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGATCAG ACACCTTGGA
  CCATGATGTC ATGAACATGT CACTTCTCAG AGAGACCTCT TGACATGTTC TTACTACCTG
  GTAGGGAGTC TGGGCTGAGC AGACCTGTCT GGGGCAGGGG ACTGCATGAA ATGAAGGTGT
  CTTGGGGATA ATGTTTACTT GGTTCTCTGT GCTCCTTCCT ATGGAGTCCA GCATAGGTAC
  R
  AACTTGGGAA CCTAGGTGCC CGAGAGGAAC TTTAGGACAC CGATAGTCCT GGAAGGTTCT
  GGGTATACTG GACAGGTCTC TGGAGGTCCT GAAGGCCACC AATTAATGCT TTCCCAAGAC
  TTGGAGTCAG GCAGAGGAGT ATACAGTGTG GATTGTGTAC GCATGTATGT GGTACCTCAT
  GGGAGGCAAT TGTGTACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522700	NES08871777	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316378					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522700	NES08871777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162954682 () rs orientation: forward

Symbol	Name	Function Class
Rr569287	regulatory region 569287	466 bp distal