rs27315745 SNP Detail

Summary

• ID
  rs27315745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCGGTT CTTCTCTGTG
  GCACTTCACT AGCCTGCAGG ATGACGATAA ATGTCAGCCA TGATGTCATG TAGCAGCCAT
  GAGCATCACA CAGACGACTC AGTCCCCAGG ACTGTTTTAT TGGTTCCAGA AAGTTCTCTT
  GTATGAGACT TTGGTACCAG CTATGTCAGG CATTGTGGCA ACCTCATCCA GGGTCTATTG
  R
  CACCACACTT CATGCCTGCC GGCTTCCTTT TGTATCTAGG TAGCTTTGAA AAGGCAACTC
  ATCTTTCAGG CTAATACCTA CCCCCATCTG GACTTTGAGT TTAAACCCTC CAGGTCACCA
  GTTGCTTTGA AGTCCAAAGG GTGGTGTCAA GTTCCTGAGA AAGTGCCTGA CTTTGATTTT
  CCCAGACCCA GCTCAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37556671	NES08906012	PERLEGEN	MM_PANEL2	f	SNP		A	A	A			A		G	A	A	G		G
ss45372057	mCV23867909	ABI	CRAMUS_MOUSE	f	SNP	G	A			G	A
ss148023874	ENSMUSSNP1714647	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A				A
ss320569684	CHEV_2_154015543	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27315745					SNP	G	A	A	A	G	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556671	NES08906012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031727 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1011 bp upstream
Rr567774	regulatory region 567774	521 bp proximal
Rr567775	regulatory region 567775	1022 bp proximal
Rr567776	regulatory region 567776	1248 bp proximal
Tssr20971	transcription start site region 20971	942 bp upstream
Tssr20972	transcription start site region 20972	956 bp upstream
Tssr20973	transcription start site region 20973	969 bp upstream
Tssr20974	transcription start site region 20974	999 bp upstream
Tssr20975	transcription start site region 20975	1026 bp upstream
Tssr20976	transcription start site region 20976	1461 bp upstream