rs27315106 SNP Detail

Summary

• ID
  rs27315106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166092475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAGGTCA GAAGACAACT
  TGCAGGTATT GGTTCTCTCC TTCTACCATG TGAGTCCTAG GAATTCAACC TCACGTTGGC
  AGGCTTGGCA GAGCCATCAG GACTCACCTT CGCCCCCCAG AGGTATCTCA CCTGGCCCAA
  AAATTCATCA TTTAAGTAAA AATGCACAAG TTCTATGACA GAAAGAAGAC ACTTTGCACC
  Y
  GGGAACCCAC TGTGGAGGAG TTTGGGGTGG GGGGGGAACT TTTTAAAAAA ATTCAGCCCT
  AAGACTTTTC AAGATGGAGT TTGGGGGTGG TTCTTCCTGG AGGCAGAGAT AGCTCGCTCG
  TAGGAAGCTG GGTGGTGGCC GTGATAGAGA GCTCTGATAT TCCATCCCGC TTCGAGTGTC
  TCAGGACACA GACTGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511926	NES08850124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315106					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511926	NES08850124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166092475 () rs orientation: forward

Symbol	Name	Function Class
Gm75116	predicted gene, 75116	631 bp upstream
Gm75120	predicted gene, 75120	within coordinates
Rr374223	regulatory region 374223	1682 bp upstream
Rr570187	regulatory region 570187	690 bp distal
Rr570188	regulatory region 570188	73 bp distal
Rr570189	regulatory region 570189	53 bp proximal
Rr570190	regulatory region 570190	891 bp proximal