rs27314342 SNP Detail

Summary

• ID
  rs27314342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTAATAT GTGGAACATG
  GCTGGGGGCA GCCACAGCCT CGGTGGGAAG TGCCTGGGTG GTGTGGGCTC TGAGCATTCA
  CACAGTAATA ATACATAATT ATTAATAATA CAATAATACA AGAGTCTCGC CGCTGAGCTC
  TGGATGAGAA AATCAAGTCC AAGAGCCGAT GCTCACTCTG CTTCTAAAAG GCGAAAGAGT
  Y
  ATTGTGGTGT GGGGACATAC CCAGATCCTC CTCACTGGGT GGGGACAGCC ATGACAACGG
  TAGGTACTTG CTCTGGTATG GTGTCTGTGG TGGGAAGGAA ACAGATAAGA CGGGAGACAG
  AGCCAGCAAT GCCAGAGCCT GACCCATCTA CACTTGGGGA CCCCTTTTAA AGAATTACAC
  ATACAGGTGA TTATCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37513762	NES08883021	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T		T	T	T	C		T
ss320608367	CHEV_2_165418963	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27314342					SNP	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513762	NES08883021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1141 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1569 bp upstream
Rr569954	regulatory region 569954	470 bp proximal
Rr569955	regulatory region 569955	1079 bp proximal
Rr569956	regulatory region 569956	1580 bp proximal
Rr569957	regulatory region 569957	1751 bp proximal
Rr569958	regulatory region 569958	1928 bp proximal
Tssr21727	transcription start site region 21727	1546 bp upstream